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Question on impact of obfuscation

Hello, our application does extensive use of Expression Trees that are compiled and executed at runtime. The question I have is regarding the impact of obfuscation taking this into account. Of course we'd like to protect our source code, but at the same time I'm not sure if obfuscation (and by that I mean the many code protection alternatives SmartAssembly offers, such as different levels of name mangling, control flow obfuscation, creating proxy for external calls, etc) may result in unexpected application issues while in production? Could you please assist?
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