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Embedded DLL not loaded correctly

This has been driving me crazy all day! We have been using this tool for years without a problem. I have added a method to a library that is embedded with the main library used by our application. For some unfathomable reason, on our test VM, it is somehow using the wrong version. But on another VM with the exact same obfuscated files, all OK. My best guess is that the one that is failing is finding an older copy of the dll. We do use this particular one for a number of utilities in our application. So I renamed all that I could find, restarted the PC but still get the same problem. If I put the dll that should be embedded in the folder, it works as expected. But that misses the point of course!
How can I find where the offending dll is being found? Or is there something else I am missing?
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