Missing Dependencies When Selecting All Tables

I have a strange issue with the application. If I pick a particular table, it's coming back with 15 dependencies. If I create a new project and pick all tables with the same settings, it only shows me 5 of the dependencies. I've double checked and in both cases I have 1 level for objects used, "object uses" is totally unchecked. I've tried external/unresolved references both checked & unchecked. 

When I hover over the one with the items missing is shows a tooltip saying "Dependencies not shown" and lists the missing ones. How do I get these in the diagram/list?


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