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Answers
One thing to look at is a SQL Compare filters: https://documentation.red-gate.com/display/SCO4/Viewing+the+comparison+results#Viewingthecomparisonresults-Usingthefilter
You can build a file and then use that as a command line switch: https://documentation.red-gate.com/display/SCO4/Command+line+switches#Commandlineswitches-/filter:<filterfile.scpf>