Bogus "add migration script" warning, even when no changes in commit tab

For the last two version I've been seeing a constant warning in SC: "These changes might cause deployment errors or data loss. Make sure a migration script covers the change." Immediately below it is the note: "Some of the changes selected may not have been made by you"

I've just been ignoring it - it appears whether or not there are any changes to commit, and even after I create and save a migration script it still remains.

Any ideas?
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